Bioinformatics Workflow Developer
Zifo RnD Solutions24 hours ago
Cary, NC, USAMid Level
Base Salary
$90k - $115k/yr
Responsibilities
- Design, develop, and productionize scalable workflows for pangenome, haplotype, imputation, and genomic quality-control processes.
- Convert research scripts and manual analyses into automated, version-controlled, reproducible pipelines.
- Process large-scale genomics datasets and formats including FASTA, GFF/GTF, VCF, BAM/CRAM, and haplotype outputs.
- Implement cloud-enabled workflows using AWS services, S3 storage, and scalable batch execution.
- Build validation, logging, provenance tracking, error handling, monitoring, reprocessing, and onboarding capabilities.
- Create production-ready workflow modules, reusable pipeline templates, and automated QC and validation reports.
- Collaborate with scientists and domain experts to ensure biological accuracy and usability.
Requirements
- Strong programming experience with Python and workflow frameworks such as Nextflow, Snakemake, or WDL.
- Experience processing large-scale genomics datasets and common bioinformatics file formats.
- Familiarity with AWS cloud services and distributed computing environments.
- Understanding of software engineering best practices including Git, testing, CI/CD, and documentation.
Benefits
- Hybrid workplace.
- Accrued vacation, medical, dental, vision, 401k with company matching, life insurance, and flexible spending accounts.
About Zifo RnD Solutions
Zifo RnD Solutions provides scientific informatics and data services to pharma, biotech, medical devices, and other R&D-driven organizations. It implements and supports ELN/LIMS/EDC and clinical data management, builds custom integrations and analytics, and offers validation, managed services, and cloud/HPC support. Founded in 2008 and headquartered in Deerfield, Illinois, it is privately held and backed by TA Associates, and serves global biopharma companies, including several top-10 firms.