2 days ago
San Francisco, CA, USAMid Level / Senior
Base Salary
$180k - $240k/yr
Responsibilities
- Build and maintain cloud data platform components including object storage, lakehouse architecture, catalogs, lineage, versioning, and access systems.
- Design and operate governed data stores and releases for clinical records, molecular features, metadata, and linked datasets.
- Develop reproducible, containerized bioinformatics pipelines for omics data using cloud batch compute.
- Implement data quality checks, biological validation, and visualizations to help teams identify data issues.
- Prepare versioned, training-ready datasets and build data deployment interfaces for partner environments.
- Operate production infrastructure including Kubernetes, deployment systems, distributed workload scheduling, security, observability, reliability, and cost optimization.
Requirements
- Two to five years of experience building data infrastructure and production pipelines in biotech, diagnostics, biobanking, health data, or a related setting involving sensitive biological or clinical data.
- Production experience operating Kubernetes, writing infrastructure as code with Terraform or similar tools, and shipping tested Python and/or Go code.
- Experience designing CI/CD and deployment systems, job orchestration, and infrastructure for machine learning workloads.
- Familiarity with a major cloud provider, preferably AWS, workflow managers such as Nextflow, lakehouse and warehouse design, data catalogs, and orchestration.
- Experience with large-scale data pipelines and bioinformatics or omics data such as WGS, RNA-seq, or proteomics.
- Helpful familiarity with OMOP, FHIR, R, or SQL, plus understanding of HIPAA, GDPR, or SOC 2 compliance controls.
- Strong engineering practices in testing, documentation, code review, and provenance; GPU or distributed training experience is valuable.
Benefits
- Hybrid role based in San Francisco, California; candidates must be based in or willing to relocate to San Francisco.
- Base salary of $180,000 to $240,000 annually.
- Visa sponsorship is not available.