1 day ago
Base Salary
$105k - $150k/yr
Responsibilities
- Connect laboratory instruments, analysis pipelines, and external sources to LIMS through automated ingestion pipelines with validation, logging, and error handling.
- Develop scripts and services to convert, normalize, and harmonize instrument, imaging, omics, and spreadsheet data into standardized schemas.
- Deploy, configure, and support Invenio or similar research data repositories, including records, metadata, persistent identifiers, and access controls.
- Design and maintain databases for experimental metadata and small-to-moderate datasets, including migrations, indexing, and backup and recovery.
- Integrate AI/ML capabilities such as semantic search, metadata extraction, auto-annotation, and natural-language query tools.
- Develop, containerize, and deploy software on cloud or local Kubernetes resources while maintaining CI/CD, monitoring, and infrastructure-as-code.
- Evaluate data-management packages, platforms, and standards and prepare technical assessments for leadership.
- Train laboratory and analytical staff and write standard operating procedures and technical documentation.
Requirements
- Hands-on experience with data integration, ingestion pipelines, data wrangling, format conversion, repository management, database development, and cloud or Kubernetes deployment is required by the listed qualifications.
- Preferred experience includes Invenio/InvenioRDM, Dataverse, DSpace, CKAN, or similar repositories.
- Preferred experience includes integrating embeddings, vector search, LLM-based retrieval, or document parsing into applications.
- Familiarity with Airflow, Nextflow, Snakemake, Argo, Helm, Terraform, or similar workflow and infrastructure tools is preferred.
- Experience with stem cell or tissue engineering laboratories, imaging and omics data, NIH Biowulf or other HPC environments, and React or similar front-end tooling is preferred.
Benefits
- 100% employee medical, dental, and vision coverage.
- Paid time off and paid holidays.
- 401(k) match up to 5%.
- Educational benefits for career growth.
- Employee referral bonus.
- Healthcare, parking, dependent care, and transportation flexible spending accounts.
Tech Stack
Categories
Data Engineering
About Axle
Axle is a bioscience and information technology services firm delivering translational research, bioinformatics, data science, and health informatics solutions for research centers and healthcare organizations. It provides contract research, software engineering, and scientific staffing, developing and operating tools and programs that support decision-making and discovery. Founded in 2002 and headquartered in Rockville, Maryland, the company is privately held and works with multiple institutes at the U.S. National Institutes of Health.